Research

Quantitative- and Network Biology

Some Collaborators

Prof. Dr. Danail Bonchev
Virginia Commonwealth University, Center for the Study of Biological Complexity, USA
http://www.vcu.edu/csbc/over_news.html

Dr. Frank Emmert-Streib
Queens University Belfast, Head of the Computational Biology and Machine Learning Lab, UK
http://www.bio-complexity.com

Prof. Dr. Armin Graber
UMIT, Institute of Bioinformatics and Translational Research, Austria; Novartis, Translational Medicine, USA
http://www.umit.at/page.cfm?vpath=departments/technik/bioinf/team

Dr. Armindo Salvador
University of Coimbra, Head of the Molecular Systems Biology Group, Portugal
http://cnc.cj.uc.pt/~salvador/

Show recent publications (17)

Recent Publications

Books (Edited and Co-edited)

Statistical Modelling of Molecular Descriptors in QSAR/QSPR
Dehmer M., Varmuza K., Bonchev D.
Wiley-VCH, 2012, to appear 		7 Bib
Applied Statistics for Network Biology: Methods in Systems Biology
Dehmer M., Emmert-Streib F., Graber A., Salvador A.
Wiley-VCH, 2011, to appear 		9 Link
Bib
Medical Biostatistics for Complex Diseases
Emmert-Streib F., Dehmer M.
Wiley-VCH Publishing, 2010 		11 Link
Bib
Analysis of Microarray Data: A Network-based Approach
Emmert-Streib F., Dehmer M.
Wiley-VCH Publishing, 2008 		13 Link
Bib

Book Chapter

On Aspects of the Degeneracy of Topological Indices. In: Enachescu F., Filip F. G., Iantovics B. (Editors): Advanced Computational Technologies
Dehmer M., Varmuza K.
Romanian Academy Press, 2010, accepted 		24 Bib

Journal Publications

Network Analysis Using a Novel Highly Discriminating Topological Index
Diudea M. V., Ilić A., Varmuza K., Dehmer M.
Complexity, 2011, accepted 		33 Link
Bib
Impact Factor:
0.948
The Impact of Storage Effects in Biobanks on Biomarker Discovery in Systems Biology Studies
Balasubramanian R., Müller L., Kugler K., Hackl W., Pleyer L., Dehmer M., Graber A.
Biomarkers, Vol. 15, No. 8 , 2010, 677-683 		35 Link
Bib
Impact Factor:
1.608
Novel Topological Descriptors for Analyzing Biological Networks
Dehmer M., Barbarini N., Varmuza K., Graber A.
BMC Structural Biology, Vol. 10 (18), 2010 		36 Link
Bib
Impact Factor:
2.79
New Polynomial-based Molecular Descriptors With Low Degeneracy
Dehmer M., Müller L., Graber A.
PLoS ONE, Vol. 5 (7), 2010, e11393 		37 Link
Bib
Impact Factor:
4.351
Networks for Systems Biology: Conceptual Connection of Data and Function
Emmert-Streib F., Dehmer M.
IET Systems Biology, 2010, accepted 		41 Bib
Impact Factor:
2.384
Systems Biology: Opening new avenues in clinical research
Molina F., Dehmer M., Perco P., Graber A., Girolami M., Spasovski G., Schanstra J. P., Vlahou A.
Nephrology Dialysis Transplantation, Vol. 25 (4), 1015-1018, 2010 		45 Link
Bib
Impact Factor:
3.306
QuACN – An R Package for Analyzing Complex Biological Networks Quantitatively
Müller L., Kugler K., Dander A., Graber A., Dehmer M.
Bioinformatics, Vol.27, Issue 1, 2010, 140-141 		46 Link
Bib
Impact Factor:
4.926
On Entropy-based Molecular Descriptors: Statistical Analysis of Real and Synthetic Chemical Structures
Dehmer M., Varmuza K., Borgert S., Emmert-Streib F.
Journal of Chemical Information and Modelling, Vol. 49, 2009, 1655-1663 		50 Link
Bib
Impact Factor:
3.882
Hierarchical coordination of periodic genes in the cell cycle of Saccharomyces cerevisiae
Emmert-Streib F., Dehmer M.
BMC Systems Biology, 2009, Vol. 3 (76) 		52 Link
Bib
Impact Factor:
4.06
Predicting cell cycle regulated genes by causal interactions
Emmert-Streib F., Dehmer M.
PLoS ONE, Vol. 4 (8), 2009, e6633 		53 Link
Bib
Impact Factor:
4.351
Information Processing in the Transcriptional Regulatory Network of Yeast: Functional Robustness
Emmert-Streib F., Dehmer M.
BMC Systems Biology, 2009, Vol. 3 (35) 		54 Link
Bib
Impact Factor:
4.06
Fault Tolerance of Information Processing in Gene Networks
Emmert-Streib F., Dehmer M.
Physica A: Statistical Mechanics and its Applications, Vol. 338 (4), 2009, 541-548 		55 Link
Bib
Impact Factor:
1.562

Quantitative Network Analysis and Machine Learning-based Techniques

Some Collaborators

Dr. Frank Emmert-Streib
Queens University Belfast, Head of the Computational Biology and Machine Learning Lab, UK
http://www.bio-complexity.com

Prof. Dr. Abbe Mowshowitz
New York City College, Department of Computer Science, USA
http://www-cs.ccny.cuny.edu/~abbe/

Prof. Dr. Alexander Mehler
Goethe-Universität, Text Technology and Computational Humanities, Department of Computer Science, Germany
http://sirao.kgf.uni-frankfurt.de/mehler/

Show recent publications (10)

Recent Publications

Books (Edited and Co-edited)

Structural Analysis of Complex Networks
Dehmer M.
Birkhäuser Publishing, in press, 2010 		10 Link
Bib
Analysis of Complex Networks: From Biology to Linguistics
Dehmer M., Emmert-Streib F.
Wiley-VCH Publishing, 2009 		12 Link
Bib

Book Chapter

Mining Graph Patterns in Web-based Systems: A Conceptual View. In: Mehler A., Sharoff S., Rehm G., Santini M. (Editors): Genres on the Web: Computational Models and Empirical Studies
Dehmer M., Emmert-Streib F.
Springer, 2010, 237-253 		26 Bib

Journal Publications

Towards Structural Network Analysis
Dehmer M., Popovscaia M.
Buletinul Academiei de Stiinte a Republicii Moldova. Matematica, Vol. 1, 2010, 3-22 		39 Link
Bib
Impact Factor:
0.111
Influence of the Time Scale on the Construction of Financial Networks
Emmert-Streib F., Dehmer M.
PLoS ONE, Vol. 5 (9), 2010, e12884 		42 Link
Bib
Impact Factor:
4.351
Identifying Critical Financial Networks of the DJIA: Toward(s) a Network based Index
Emmert-Streib F., Dehmer M.
Complexity, Vol. 16, Issue 1, 2010, 24-33 		43 Link
Bib
Impact Factor:
0.948
A Comparative Analysis of Multidimensional Features of Objects Resembling Sets of Graphs
Dehmer M., Emmert-Streib F., Gesell T.
Applied Mathematics and Computation, Vol. 196 (1), 2008, 221-235 		63 Link
Bib
Impact Factor:
1.124
Measuring the Structural Similarity of Web-based Documents: A novel Approach
Dehmer M., Emmert-Streib F., Mehler A., Kilian J.
International Journal of Computational Intelligence, Vol. 3 (1), 2006, 1-7 		75 Link
Bib

Peer-Reviewed Conference Publications

Towards a Partitioning of the Input Space of Boolean Networks: Variable Selection using Bagging. In: Proceedings of COMPLEX’2009 - The First International Conference on Complex Sciences: Theory and Applications
Emmert-Streib F., Dehmer M.
Springer, Lecture Notes, Vol. 4, 2009, 715-723 		85 Bib
Organizational Structure of the Transcriptional Regulatory Network of Yeast: Periodic Genes. In: Proceedings of COMPLEX’2009 - The First International Conference on Complex Sciences: Theory and Applications
Emmert-Streib F., Dehmer M.
Springer, Lecture Notes, Vol. 4 2009, 140-148 		86 Bib

Information Theory of Networks

Some Collaborators

Prof. Dr. Danail Bonchev
Virginia Commonwealth University, Center for the Study of Biological Complexity, USA
http://www.vcu.edu/csbc/over_news.html

Dr. Frank Emmert-Streib
Queens University Belfast, Head of the Computational Biology and Machine Learning Lab, UK
http://www.bio-complexity.com

Prof. Dr. Kurt Varmuza
Vienna University of Technology, Laboratory for Chemometrics, Institute of Chemical Engineering, Austria
http://www.lcm.tuwien.ac.at/vk/

Prof. Dr. Abbe Mowshowitz
New York City College, Department of Computer Science, USA
http://www-cs.ccny.cuny.edu/~abbe/

Show recent publications (12)

Recent Publications

Books (Edited and Co-edited)

Towards an Information Theory of Complex Networks: Statistical Methods and Applications
Dehmer M., Emmert-Streib F., Mehler A.
Birkhäuser Publishing, 2012, to appear 		8 Bib

Book Chapter

On measuring the complexity of sets of graphs using graph entropy. In: Enachescu F., Filip F. G., Iantovics B. (Editors): Advanced Computational Technologies
Dehmer M., Mowshowitz A.
Romanian Academy Press, 2010, accepted 		23 Bib
Recent Developments on Information-theoretic Descriptors to Analyze Networks. In: Gutman I., Furtula B. (Editors): Novel molecular Structure Descriptors - Theory and Applications I
Dehmer M., Graber A.
Mathematical Chemistry Monographs, Vol. 8, 2010, 21-38 		25 Bib

Journal Publications

A History of Graph Entropy Measures
Dehmer M., Mowshowitz A.
Information Sciences Vol. 1, Issue 1, 2011, 57-78 		32 Link
Bib
Impact Factor:
3.291
Connections between Classical and Parametric Network Entropies
Dehmer M., Mowshowitz A., Emmert-Streib F.
PLoS ONE, Vol. 6 (1), 2011, e15733 		34 Bib
Impact Factor:
4.351
Inequalities for Entropy-Based Measures of Network Information Content
Dehmer M., Mowshowitz A.
Applied Mathematics and Computation, Vol. 215 (12), 2010, 4263-4271 		40 Link
Bib
Impact Factor:
1.124
A Symmetry Index for Graphs
Mowshowitz A., Dehmer M.
Symmetry: Culture and Science, Vol. 21 (4), 2010 		44 Link
Bib
A Large Scale Analysis of Information-Theoretic Network Complexity Measures Using Chemical Structures
DehmerM., Barbarini N., Varmuza K., Graber A.
PLoS ONE, Vol. 4 (12), 2009, e8057 		49 Link
Bib
Impact Factor:
4.351
Structural Information Content of Networks: Graph Entropy based on Local Vertex Functionals
Dehmer M., Emmert-Streib F.
Computational Biology and Chemistry, Vol. 32 (2), 2008, 131-138 		57 Link
Bib
Impact Factor:
1.37
The Structural Information Content of Chemical Networks
Dehmer M., Emmert-Streib F.
Zeitschrift für Naturforschung A, Vol. 63(3-4), 2008, 155-158 		58 Link
Bib
Impact Factor:
0.63
Entropy Bounds for Hierarchical Molecular Networks
Dehmer M., Borgert S., Emmert-Streib F.
PLoS ONE, Vol. 3 (8), 2008, e3079 		59 Link
Bib
Impact Factor:
4.351
Information-theoretic Concepts for the Analysis of Complex Networks
Dehmer M.
Applied Artificial Intelligence, Vol. 22, 2008, 684-706 		60 Link
Bib
Impact Factor:
0.58

Complex Analysis

Some Collaborators

Prof. Dr. Doru Stefanescu
University of Bucharest, Romania
http://www.unibuc.ro/ro/cd_dorstefanescu_ro

Show recent publications (2)

Recent Publications

Books

Die analytische Theorie der Polynome. Nullstellenschranken für komplexwertige Polynome
Dehmer M.
Weissensee-Verlag, Berlin, 2004 		6 Link
Bib

Journal Publications

On the Location of Zeros for complex Polynomials
Dehmer M.
Journal of Inequalities in Pure and Applied Mathematics, Vol. 7, Issue 1, 2006 		74 Link
Bib